Leenings, R., Winter, N. R., Plagwitz, L., Holstein, V., Ernsting, J., Sarink, K., Fisch, L., Steenweg, J., Kleine- Vennekate, L., Gebker, J., Emden, D., Grotegerd, D., Opel, N., Risse, B., Jiang, X., Dannlowski, U., & Hahn, T. (2021). PHOTONAI-A Python API for rapid machine learning model development. PLoS One, 16(July), Article e0254062. https://doi.org/10.1371/journal.pone.0254062
PHOTONAI-A Python API for rapid machine learning model development. / Leenings, Ramona; Winter, Nils Ralf; Plagwitz, Lucas et al.
In:
PLoS One, Vol. 16, No. July, e0254062, 07.2021.
Research output: Contribution to journal › Article › peer-review
Leenings, R, Winter, NR, Plagwitz, L, Holstein, V, Ernsting, J, Sarink, K, Fisch, L, Steenweg, J, Kleine- Vennekate, L, Gebker, J, Emden, D, Grotegerd, D, Opel, N, Risse, B, Jiang, X, Dannlowski, U & Hahn, T 2021, 'PHOTONAI-A Python API for rapid machine learning model development', PLoS One, vol. 16, no. July, e0254062. https://doi.org/10.1371/journal.pone.0254062
Leenings R, Winter NR, Plagwitz L, Holstein V, Ernsting J, Sarink K et al. PHOTONAI-A Python API for rapid machine learning model development. PLoS One. 2021 Jul;16(July):e0254062. doi: 10.1371/journal.pone.0254062
Leenings, Ramona ; Winter, Nils Ralf ; Plagwitz, Lucas et al. / PHOTONAI-A Python API for rapid machine learning model development. In: PLoS One. 2021 ; Vol. 16, No. July.
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title = "PHOTONAI-A Python API for rapid machine learning model development",
abstract = "PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support the iterative model development process and automates the repetitive training, hyperparameter optimization and evaluation tasks. Importantly, the workflow ensures unbiased performance estimates while still allowing the user to fully customize the machine learning analysis. PHOTONAI extends existing solutions with a novel pipeline implementation supporting more complex data streams, feature combinations, and algorithm selection. Metrics and results can be conveniently visualized using the PHOTONAI Explorer and predictive models are shareable in a standardized format for further external validation or application. A growing add-on ecosystem allows researchers to offer data modality specific algorithms to the community and enhance machine learning in the areas of the life sciences. Its practical utility is demonstrated on an exemplary medical machine learning problem, achieving a state-of-the-art solution in few lines of code. Source code is publicly available on Github, while examples and documentation can be found at www. photon-ai.com. ",
author = "Ramona Leenings and Winter, {Nils Ralf} and Lucas Plagwitz and Vincent Holstein and Jan Ernsting and Kelvin Sarink and Lukas Fisch and Jakob Steenweg and {Kleine- Vennekate}, Leon and Julian Gebker and Daniel Emden and Dominik Grotegerd and Nils Opel and Benjamin Risse and Xiaoyi Jiang and Udo Dannlowski and Tim Hahn",
note = "Publisher Copyright: {\textcopyright} 2021 Leenings et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",
year = "2021",
month = jul,
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AU - Winter, Nils Ralf
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AU - Ernsting, Jan
AU - Sarink, Kelvin
AU - Fisch, Lukas
AU - Steenweg, Jakob
AU - Kleine- Vennekate, Leon
AU - Gebker, Julian
AU - Emden, Daniel
AU - Grotegerd, Dominik
AU - Opel, Nils
AU - Risse, Benjamin
AU - Jiang, Xiaoyi
AU - Dannlowski, Udo
AU - Hahn, Tim
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© 2021 Leenings et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
PY - 2021/7
Y1 - 2021/7
N2 - PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support the iterative model development process and automates the repetitive training, hyperparameter optimization and evaluation tasks. Importantly, the workflow ensures unbiased performance estimates while still allowing the user to fully customize the machine learning analysis. PHOTONAI extends existing solutions with a novel pipeline implementation supporting more complex data streams, feature combinations, and algorithm selection. Metrics and results can be conveniently visualized using the PHOTONAI Explorer and predictive models are shareable in a standardized format for further external validation or application. A growing add-on ecosystem allows researchers to offer data modality specific algorithms to the community and enhance machine learning in the areas of the life sciences. Its practical utility is demonstrated on an exemplary medical machine learning problem, achieving a state-of-the-art solution in few lines of code. Source code is publicly available on Github, while examples and documentation can be found at www. photon-ai.com.
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