PICRUSt2 for prediction of metagenome functions

Gavin M. Douglas; Vincent J. Maffei; Jesse R. Zaneveld; Svetlana N. Yurgel; James R. Brown; Christopher M. Taylor; Curtis Huttenhower; Morgan G.I. Langille

doi:10.1038/s41587-020-0548-6

PICRUSt2 for prediction of metagenome functions

Gavin M. Douglas, Vincent J. Maffei, Jesse R. Zaneveld, Svetlana N. Yurgel, James R. Brown, Christopher M. Taylor, Curtis Huttenhower, Morgan G.I. Langille

Medicine

Research output: Contribution to journal › Letter › peer-review

3790 Citations (Scopus)

Original language	English
Pages (from-to)	685-688
Number of pages	4
Journal	Nature Biotechnology
Volume	38
Issue number	6
DOIs	https://doi.org/10.1038/s41587-020-0548-6
Publication status	Published - Jun 1 2020

Bibliographical note

Funding Information:
We thank Zhenjiang Xu and Amy Chen for providing us access to data files used for testing and the default reference database. We also thank Heather McIntosh for help designing the pipeline flowchart. G.M.D. is funded by an NSERC CGS-D scholarship. V.J.M. is funded by an NIH/NIAAA Ruth L. Kirschstein National Research Service Award (F30 AA026527). J.R.Z. is supported by NSF IOS CAREER grant 1942647. S.Y.N. is funded by an NSERC Discovery Grant. C.H. is funded in part by NIH NIDDK grants U54DK102557 and R24DK110499. M.G.I.L. is funded by an NSERC Discovery Grant and an NSERC Collaborative Research Development with co-funding from GlaxoSmithKline to M.G.I.L. and J.R.B.

ASJC Scopus Subject Areas

Biotechnology
Bioengineering
Applied Microbiology and Biotechnology
Molecular Medicine
Biomedical Engineering

PubMed: MeSH publication types

Letter
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.

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10.1038/s41587-020-0548-6

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Douglas, G. M., Maffei, V. J., Zaneveld, J. R., Yurgel, S. N., Brown, J. R., Taylor, C. M., Huttenhower, C., & Langille, M. G. I. (2020). PICRUSt2 for prediction of metagenome functions. Nature Biotechnology, 38(6), 685-688. https://doi.org/10.1038/s41587-020-0548-6

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note = "Funding Information: We thank Zhenjiang Xu and Amy Chen for providing us access to data files used for testing and the default reference database. We also thank Heather McIntosh for help designing the pipeline flowchart. G.M.D. is funded by an NSERC CGS-D scholarship. V.J.M. is funded by an NIH/NIAAA Ruth L. Kirschstein National Research Service Award (F30 AA026527). J.R.Z. is supported by NSF IOS CAREER grant 1942647. S.Y.N. is funded by an NSERC Discovery Grant. C.H. is funded in part by NIH NIDDK grants U54DK102557 and R24DK110499. M.G.I.L. is funded by an NSERC Discovery Grant and an NSERC Collaborative Research Development with co-funding from GlaxoSmithKline to M.G.I.L. and J.R.B.",

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AU - Maffei, Vincent J.

AU - Zaneveld, Jesse R.

AU - Yurgel, Svetlana N.

AU - Brown, James R.

AU - Taylor, Christopher M.

AU - Huttenhower, Curtis

AU - Langille, Morgan G.I.

N1 - Funding Information: We thank Zhenjiang Xu and Amy Chen for providing us access to data files used for testing and the default reference database. We also thank Heather McIntosh for help designing the pipeline flowchart. G.M.D. is funded by an NSERC CGS-D scholarship. V.J.M. is funded by an NIH/NIAAA Ruth L. Kirschstein National Research Service Award (F30 AA026527). J.R.Z. is supported by NSF IOS CAREER grant 1942647. S.Y.N. is funded by an NSERC Discovery Grant. C.H. is funded in part by NIH NIDDK grants U54DK102557 and R24DK110499. M.G.I.L. is funded by an NSERC Discovery Grant and an NSERC Collaborative Research Development with co-funding from GlaxoSmithKline to M.G.I.L. and J.R.B.

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PICRUSt2 for prediction of metagenome functions

Bibliographical note

ASJC Scopus Subject Areas

PubMed: MeSH publication types

Access to Document

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