Nucleotide sequence of an exceptionally long 5.8S ribosomal RNA from crithidia fasciculata

Murray N. Schnare, Michael W. Gray

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Résumé

In Crithidia fasciculata, a trypanosomatid protozoan, the large ribosomal subunit contains five small RNA species (e, f, g, i, j) in addition to 5S rRNA [Gray, M.W. (1981) Mol. Cell, Biol. 1, 347-357]. The complete primary sequence of species i is shown here to be pAACGUGUmCGCGAUGGAUGACUUGGCUUCCUAUCUCGUUGA... AGAmACGCAGUSAAGUGCGAUAAGUGGUAψCAAUUGmCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGG... CGCAUGGGAGAAGCUCUUUUGAGUCAUCCCCGUGCAUGCCAUAUUCUCCAmGUGUCGAA(C)OH. This sequence establishes that species i is a 5.8S rRNA, despite its exceptional length (171-172 nucleotides). The extra nucleotides in C. fasciculata 5.8S rRNA are located in a region whose primary sequence and length are highly variable among 5.8S rRNAs, but which is capable of forming a stable hairpin loop structure (the "G+C-rich hairpin"). The sequence of C. fasciculata 5.8S rRNA is no more closely related to that of another protozoan, Acanthamoeba castellanii , than it is to representative 5,8S rRNA sequences from the other eukaryotic kingdoms, emphasizing the deep phylogenetic divisions that seem to exist within the Kingdom Protista.

Langue d'origineEnglish
Pages (de-à)2085-2092
Nombre de pages8
JournalNucleic Acids Research
Volume10
Numéro de publication6
DOI
Statut de publicationPublished - mars 25 1982

Note bibliographique

Funding Information:
data prior to publication. We are grateful to R.M. MacKay for a gift of unlabelled C. faacicv.la.ta 5.8S rRNA. This work was supported by a grant from the Medical Research Council of Canada to M.W.G.

ASJC Scopus Subject Areas

  • Genetics

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