Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow

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11 Citations (Scopus)

Résumé

Sequencing microbiome samples has recently become a fast and cost-effective method to taxonomically profile communities. The growing interest in analyzing microbial sequencing data has attracted many new researchers to the field. Here, we present a straightforward bioinformatic pipeline that aims to streamline the processing of 16S rRNA sequencing data. This workflow is part of the larger project called Microbiome Helper (Comeau et al. mSyst 2:e00127-16, 2017), which includes other bioinformatic workflows, tutorials, and scripts available here: https://github.com/mlangill/microbiome_helper/wiki.

Langue d'origineEnglish
Titre de la publication principaleMethods in Molecular Biology
Maison d'éditionHumana Press Inc.
Pages131-141
Nombre de pages11
DOI
Statut de publicationPublished - 2018

Séries de publication

PrénomMethods in Molecular Biology
Volume1849
ISSN (imprimé)1064-3745

Note bibliographique

Publisher Copyright:
© 2018, Springer Science+Business Media, LLC, part of Springer Nature.

ASJC Scopus Subject Areas

  • Molecular Biology
  • Genetics

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