Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow

Gavin M. Douglas; André M. Comeau; Morgan G.I. Langille

doi:10.1007/978-1-4939-8728-3_9

Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow

Gavin M. Douglas, André M. Comeau, Morgan G.I. Langille

Medicine

Résultat de recherche: Chapter

11 Citations (Scopus)

Résumé

Sequencing microbiome samples has recently become a fast and cost-effective method to taxonomically profile communities. The growing interest in analyzing microbial sequencing data has attracted many new researchers to the field. Here, we present a straightforward bioinformatic pipeline that aims to streamline the processing of 16S rRNA sequencing data. This workflow is part of the larger project called Microbiome Helper (Comeau et al. mSyst 2:e00127-16, 2017), which includes other bioinformatic workflows, tutorials, and scripts available here: https://github.com/mlangill/microbiome_helper/wiki.

Langue d'origine	English
Titre de la publication principale	Methods in Molecular Biology
Maison d'édition	Humana Press Inc.
Pages	131-141
Nombre de pages	11
DOI	https://doi.org/10.1007/978-1-4939-8728-3_9
Statut de publication	Published - 2018

Séries de publication

Prénom	Methods in Molecular Biology
Volume	1849
ISSN (imprimé)	1064-3745

Note bibliographique

Publisher Copyright:
© 2018, Springer Science+Business Media, LLC, part of Springer Nature.

ASJC Scopus Subject Areas

Molecular Biology
Genetics

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10.1007/978-1-4939-8728-3_9

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Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow

Résumé

Séries de publication

Note bibliographique

ASJC Scopus Subject Areas

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Autres fichiers et liens

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