Microbedb: A locally maintainable database of microbial genomic sequences

Morgan G.I. Langille; Matthew R. Laird; William W.L. Hsiao; Terry A. Chiu; Jonathan A. Eisen; Fiona S.L. Brinkman

doi:10.1093/bioinformatics/bts273

Microbedb: A locally maintainable database of microbial genomic sequences

Morgan G.I. Langille, Matthew R. Laird, William W.L. Hsiao, Terry A. Chiu, Jonathan A. Eisen, Fiona S.L. Brinkman

Medicine

Medicine

Producción científica: Contribución a una revista › Artículo › revisión exhaustiva

14 Citas (Scopus)

Resumen

Analysis of microbial genomes often requires the general organization and comparison of tens to thousands of genomes both from public repositories and unpublished sources. MicrobeDB provides a foundation for such projects by the automation of downloading published, completed bacterial and archaeal genomes from key sources, parsing annotations of all genomes (both public and private) into a local database, and allowing interaction with the database through an easy to use programming interface. MicrobeDB creates a simple to use, easy to maintain, centralized local resource for various large-scale comparative genomic analyses and a back-end for future microbial application design.

Idioma original	English
Número de artículo	bts273
Páginas (desde-hasta)	1947-1948
Número de páginas	2
Publicación	Bioinformatics
Volumen	28
N.º	14
DOI	https://doi.org/10.1093/bioinformatics/bts273
Estado	Published - jul. 2012

Nota bibliográfica

Funding Information:
Funding: This work was supported by the Canadian Institutes of Health Research, Michael Smith Foundation for Health Research, Genome Canada, and Gordon and Betty Moore Foundation.

ASJC Scopus Subject Areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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AU - Chiu, Terry A.

AU - Eisen, Jonathan A.

AU - Brinkman, Fiona S.L.

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Microbedb: A locally maintainable database of microbial genomic sequences

Resumen

Nota bibliográfica

ASJC Scopus Subject Areas

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