Microbedb: A locally maintainable database of microbial genomic sequences

Morgan G.I. Langille; Matthew R. Laird; William W.L. Hsiao; Terry A. Chiu; Jonathan A. Eisen; Fiona S.L. Brinkman

doi:10.1093/bioinformatics/bts273

Microbedb: A locally maintainable database of microbial genomic sequences

Morgan G.I. Langille, Matthew R. Laird, William W.L. Hsiao, Terry A. Chiu, Jonathan A. Eisen, Fiona S.L. Brinkman

Medicine

Medicine

Résultat de recherche: Article › examen par les pairs

14 Citations (Scopus)

Résumé

Analysis of microbial genomes often requires the general organization and comparison of tens to thousands of genomes both from public repositories and unpublished sources. MicrobeDB provides a foundation for such projects by the automation of downloading published, completed bacterial and archaeal genomes from key sources, parsing annotations of all genomes (both public and private) into a local database, and allowing interaction with the database through an easy to use programming interface. MicrobeDB creates a simple to use, easy to maintain, centralized local resource for various large-scale comparative genomic analyses and a back-end for future microbial application design.

Langue d'origine	English
Numéro d'article	bts273
Pages (de-à)	1947-1948
Nombre de pages	2
Journal	Bioinformatics
Volume	28
Numéro de publication	14
DOI	https://doi.org/10.1093/bioinformatics/bts273
Statut de publication	Published - juill. 2012

Note bibliographique

Funding Information:
Funding: This work was supported by the Canadian Institutes of Health Research, Michael Smith Foundation for Health Research, Genome Canada, and Gordon and Betty Moore Foundation.

ASJC Scopus Subject Areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bts273

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note = "Funding Information: Funding: This work was supported by the Canadian Institutes of Health Research, Michael Smith Foundation for Health Research, Genome Canada, and Gordon and Betty Moore Foundation.",

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AU - Eisen, Jonathan A.

AU - Brinkman, Fiona S.L.

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Microbedb: A locally maintainable database of microbial genomic sequences

Résumé

Note bibliographique

ASJC Scopus Subject Areas

Accès au document

Autres fichiers et liens

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